PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G162600.1
Common NameB456_003G162600, LOC105789909
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 177aa    MW: 18787 Da    PI: 4.7951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G162600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.9e-161259355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        y+G+r ++ +g+Wv+eIr+p+    + +r++lg++ t+e+Aa+a++ a+++l+g
  Gorai.003G162600.1 12 YRGIR-CR-SGKWVSEIREPR----KaTRIWLGTYPTPEMAAAAYDVAALALKG 59
                        9***9.55.6*********94....36************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.0731167IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-181169IPR016177DNA-binding domain
SMARTSM003805.0E-281173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-271169IPR001471AP2/ERF domain
PRINTSPR003677.9E-71223IPR001471AP2/ERF domain
PfamPF008471.5E-91259IPR001471AP2/ERF domain
CDDcd000189.98E-181269No hitNo description
PRINTSPR003677.9E-74969IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MASSSSGKHP MYRGIRCRSG KWVSEIREPR KATRIWLGTY PTPEMAAAAY DVAALALKGS  60
EAVVNFPDSV GSYPIPGSTS SADIRKAAAA AAAMKRGENK SSESSNLVAT VQNHVVKDEG  120
FTTGEYVDED VFLNMPNLLV DMANGLLVSP PRISLIPSDD DDDSPDNCNG GSLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-14572168ATERF1
3gcc_A1e-14572168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2598100.0KP259810.1 Gossypium barbadense APETALA2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472669.11e-128PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ901e-51ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0D2RNQ41e-128A0A0D2RNQ4_G
STRINGVIT_16s0100g00400.t013e-67(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-38ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]